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SRX4733702: FWSconsortium, WGS of E. coli: Solid - Stool; Clinical; Human (Homo sapiens)
1 OXFORD_NANOPORE (MinION) run: 46,172 spots, 260.1M bases, 203.5Mb downloads

Design: MasterPure Complete DNA purification kit; Covaris g-tube physical fragmentation; run 1 oxford nanopore 1D genomic DNA by ligation sequencing kit with Native Barcoding on minION; run 2 Oxford Nanopore Rapid Barcoding sequencing kit on MinION; data from both runs merged after basecalling and demultiplexing with Albacore v2.3.0
Submitted by: Public Health Agency of Canada
Study: Food and Water Safety consortium
show Abstracthide Abstract
The food and water safety pilot project is a comprehensive strategy that integrates multidisciplinary components from diverse federal science sources to address two main goals. The first is to enhance food and water safety by developing genomics-based methods for pathogen isolation, detection and characterisation. The second goal is to develop a federally integrated system to manage, store and provide open access to genomic data related to food and water borne pathogens. The model organisms for this study are Shiga-toxin Producing Escherchia coli (STEC) and Salmonella Enteritidis from Environmental, animal husbandry, food samples, and medical isolates.
Sample: stx2a
SAMN08768111 • SRS3815840 • All experiments • All runs
Library:
Name: FWSEC0010_minion
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 46,172 spots, 260.1M bases, 203.5Mb
Run# of Spots# of BasesSizePublished
SRR789626046,172260.1M203.5Mb2019-01-22

ID:
6410000

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